Article cité par

La fonctionnalité Article cité par… liste les citations d'un article. Ces citations proviennent de la base de données des articles de EDP Sciences, ainsi que des bases de données d'autres éditeurs participant au programme CrossRef Cited-by Linking Program. Vous pouvez définir une alerte courriel pour être prévenu de la parution d'un nouvel article citant " cet article (voir sur la page du résumé de l'article le menu à droite).

Article cité :

Segregated structures of ring polymer melts near the surface: a molecular dynamics simulation study

Eunsang Lee and YounJoon Jung
Soft Matter 11 (30) 6018 (2015)
https://doi.org/10.1039/C5SM01097G

Poly(N‐isopropylacrylamid)‐Phasendiagramme: 50 Jahre Forschung

Avraham Halperin, Martin Kröger and Françoise M. Winnik
Angewandte Chemie 127 (51) 15558 (2015)
https://doi.org/10.1002/ange.201506663

Effects of topological constraints on globular polymers

Maxim V. Imakaev, Konstantin M. Tchourine, Sergei K. Nechaev and Leonid A. Mirny
Soft Matter 11 (4) 665 (2015)
https://doi.org/10.1039/C4SM02099E

Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data

Saeed Saberi, Pau Farré, Olivier Cuvier and Eldon Emberly
BMC Bioinformatics 16 (1) (2015)
https://doi.org/10.1186/s12859-015-0584-2

Poly(N‐isopropylacrylamide) Phase Diagrams: Fifty Years of Research

Avraham Halperin, Martin Kröger and Françoise M. Winnik
Angewandte Chemie International Edition 54 (51) 15342 (2015)
https://doi.org/10.1002/anie.201506663

Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling

Fabrizio Benedetti, Aleksandre Japaridze, Julien Dorier, et al.
Nucleic Acids Research 43 (4) 2390 (2015)
https://doi.org/10.1093/nar/gkv055

A statistical model of intra-chromosome contact maps

Leonid I. Nazarov, Mikhail V. Tamm, Vladik A. Avetisov and Sergei K. Nechaev
Soft Matter 11 (5) 1019 (2015)
https://doi.org/10.1039/C4SM02519A

Current theoretical models fail to predict the topological complexity of the human genome

Javier Arsuaga, Reyka G. Jayasinghe, Robert G. Scharein, et al.
Frontiers in Molecular Biosciences 2 (2015)
https://doi.org/10.3389/fmolb.2015.00048

Structural organization of human replication timing domains

Rasha E. Boulos, Guénola Drillon, Françoise Argoul, Alain Arneodo and Benjamin Audit
FEBS Letters 589 (20PartA) 2944 (2015)
https://doi.org/10.1016/j.febslet.2015.04.015

From a melt of rings to chromosome territories: the role of topological constraints in genome folding

Jonathan D Halverson, Jan Smrek, Kurt Kremer and Alexander Y Grosberg
Reports on Progress in Physics 77 (2) 022601 (2014)
https://doi.org/10.1088/0034-4885/77/2/022601

Annealed lattice animal model and Flory theory for the melt of non-concatenated rings: towards the physics of crumpling

Alexander Y. Grosberg
Soft Matter 10 (4) 560 (2014)
https://doi.org/10.1039/C3SM52805G

Chain collapse and aggregation in dilute solutions of poly(methyl methacrylate) below the theta temperature

Yasuyuki Maki
Polymer Journal 46 (10) 641 (2014)
https://doi.org/10.1038/pj.2014.39

Fractal Globules: A New Approach to Artificial Molecular Machines

Vladik A. Avetisov, Viktor A. Ivanov, Dmitry A. Meshkov and Sergei K. Nechaev
Biophysical Journal 107 (10) 2361 (2014)
https://doi.org/10.1016/j.bpj.2014.10.019

Annealed lattice animal model and Flory theory for the melt of non-concatenated rings: towards the physics of crumpling

Alexander Y. Grosberg
Soft Matter 10 (4) 560 (2014)
https://doi.org/10.1039/c3sm52805g

New Models of the Cell Nucleus: Crowding, Entropic Forces, Phase Separation, and Fractals

Angelo Rosa and Christophe Zimmer
International Review of Cell and Molecular Biology, New Models of the Cell Nucleus: Crowding, Entropic Forces, Phase Separation, and Fractals 307 275 (2014)
https://doi.org/10.1016/B978-0-12-800046-5.00009-6

Crumpled globule formation during collapse of a long flexible and semiflexible polymer in poor solvent

A. Chertovich and P. Kos
The Journal of Chemical Physics 141 (13) (2014)
https://doi.org/10.1063/1.4896701

Geometry of the nucleus: a perspective on gene expression regulation

Maxime Woringer, Xavier Darzacq and Ignacio Izeddin
Current Opinion in Chemical Biology 20 112 (2014)
https://doi.org/10.1016/j.cbpa.2014.05.009

New Models of the Cell Nucleus: Crowding, Entropic Forces, Phase Separation, and Fractals

Sébastien Huet, Christophe Lavelle, Hubert Ranchon, et al.
International Review of Cell and Molecular Biology, New Models of the Cell Nucleus: Crowding, Entropic Forces, Phase Separation, and Fractals 307 443 (2014)
https://doi.org/10.1016/B978-0-12-800046-5.00013-8

A Study of Fractality and Long-Range Order in the Distribution of Transposable Elements in Eukaryotic Genomes Using the Scaling Properties of Block Entropy and Box-Counting

Labrini Athanasopoulou, Diamantis Sellis and Yannis Almirantis
Entropy 16 (4) 1860 (2014)
https://doi.org/10.3390/e16041860

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

Ferhat Ay, Evelien M. Bunnik, Nelle Varoquaux, et al.
Genome Research 24 (6) 974 (2014)
https://doi.org/10.1101/gr.169417.113

On the stability of fractal globules

Raoul D. Schram, Gerard T. Barkema and Helmut Schiessel
The Journal of Chemical Physics 138 (22) (2013)
https://doi.org/10.1063/1.4807723

Polymer physics, scaling and heterogeneity in the spatial organisation of chromosomes in the cell nucleus

M. Barbieri, A. Scialdone, A. Gamba, A. Pombo and M. Nicodemi
Soft Matter 9 (36) 8631 (2013)
https://doi.org/10.1039/c3sm51436f

Understanding spatial organizations of chromosomes via statistical analysis of Hi‐C data

Ming Hu, Ke Deng, Zhaohui Qin and Jun S. Liu
Quantitative Biology 1 (2) 156 (2013)
https://doi.org/10.1007/s40484-013-0016-0

A novel family of space-filling curves in their relation to chromosome conformation in eukaryotes

Jan Smrek and Alexander Y. Grosberg
Physica A: Statistical Mechanics and its Applications 392 (24) 6375 (2013)
https://doi.org/10.1016/j.physa.2013.08.014

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

Job Dekker, Marc A. Marti-Renom and Leonid A. Mirny
Nature Reviews Genetics 14 (6) 390 (2013)
https://doi.org/10.1038/nrg3454

Stalled phase transition model of high-elastic polymer

Vadim V Atrazhev, Sergei F Burlatsky, Dmitry V Dmitriev and Vadim I Sultanov
Journal of Statistical Mechanics: Theory and Experiment 2013 (02) P02004 (2013)
https://doi.org/10.1088/1742-5468/2013/02/P02004

Genome‐wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation

Jacob E. Lemieux, Sue A. Kyes, Thomas D. Otto, et al.
Molecular Microbiology 90 (3) 519 (2013)
https://doi.org/10.1111/mmi.12381

DNA loop domain organization as revealed by single-cell gel electrophoresis

Katerina Afanasieva, Marianna Chopei, Marianna Zazhytska, Maria Vikhreva and Andrei Sivolob
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1833 (12) 3237 (2013)
https://doi.org/10.1016/j.bbamcr.2013.09.021

Nuclear organization and chromatin dynamics in yeast: Biophysical models or biologically driven interactions?

Benjamin Albert, Isabelle Léger-Silvestre, Christophe Normand and Olivier Gadal
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1819 (6) 468 (2012)
https://doi.org/10.1016/j.bbagrm.2011.12.010

Comparison between the LCST and UCST Transitions of Double Thermoresponsive Diblock Copolymers: Insights into the Behavior of POEGMA in Alcohols

Peter J. Roth, Thomas P. Davis and Andrew B. Lowe
Macromolecules 45 (7) 3221 (2012)
https://doi.org/10.1021/ma300374y

Slow knot formation by suppressed self-reptation in a collapsed polymer chain

Mitsuo Nakata, Yoshiki Nakamura, Naoki Sasaki and Yasuyuki Maki
Physical Review E 85 (2) (2012)
https://doi.org/10.1103/PhysRevE.85.021802

Widespread occurrence of power-law distributions in inter-repeat distances shaped by genome dynamics

Alexandros Klimopoulos, Diamantis Sellis and Yannis Almirantis
Gene 499 (1) 88 (2012)
https://doi.org/10.1016/j.gene.2012.02.005

A fractal model for nuclear organization: current evidence and biological implications

A. Bancaud, C. Lavelle, S. Huet and J. Ellenberg
Nucleic Acids Research 40 (18) 8783 (2012)
https://doi.org/10.1093/nar/gks586

How two meters of DNA fit into a cell nucleus: Polymer models with topological constraints and experimental data

A. Yu. Grosberg
Polymer Science Series C 54 (1) 1 (2012)
https://doi.org/10.1134/S1811238212070028

Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations

T. R. Einert, C. E. Sing, A. Alexander-Katz and R. R. Netz
The European Physical Journal E 34 (12) (2011)
https://doi.org/10.1140/epje/i2011-11130-8

Simulation Analysis of the Temperature Dependence of Lignin Structure and Dynamics

Loukas Petridis, Roland Schulz and Jeremy C. Smith
Journal of the American Chemical Society 133 (50) 20277 (2011)
https://doi.org/10.1021/ja206839u

Unraveling the Tangled Complexity of DNA: Combining Mathematical Modeling and Experimental Biology to Understand Replication, Recombination and Repair

S. Robic and J. R. Jungck
Mathematical Modelling of Natural Phenomena 6 (6) 108 (2011)
https://doi.org/10.1051/mmnp/20116607

Collapse kinetics of vibrated granular chains

Pei-Ren Jeng, Kuan Hua Chen, Gwo-jen Hwang, et al.
The Journal of Chemical Physics 135 (24) (2011)
https://doi.org/10.1063/1.3672105

Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. I. Statics

Jonathan D. Halverson, Won Bo Lee, Gary S. Grest, Alexander Y. Grosberg and Kurt Kremer
The Journal of Chemical Physics 134 (20) (2011)
https://doi.org/10.1063/1.3587137

Capturing the essence of folding and functions of biomolecules using coarse-grained models

Changbong Hyeon and D. Thirumalai
Nature Communications 2 (1) (2011)
https://doi.org/10.1038/ncomms1481

Coil-to-globule transition by dissipative particle dynamics simulation

Jiayi Guo, Haojun Liang and Zhen-Gang Wang
The Journal of Chemical Physics 134 (24) (2011)
https://doi.org/10.1063/1.3604812

Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization

Marc A. Marti-Renom, Leonid A. Mirny and Philip E. Bourne
PLoS Computational Biology 7 (7) e1002125 (2011)
https://doi.org/10.1371/journal.pcbi.1002125

High order chromatin architecture shapes the landscape of chromosomal alterations in cancer

Geoff Fudenberg, Gad Getz, Matthew Meyerson and Leonid A Mirny
Nature Biotechnology 29 (12) 1109 (2011)
https://doi.org/10.1038/nbt.2049

Scaling properties and fractality in the distribution of coding segments in eukaryotic genomes revealed through a block entropy approach

Labrini Athanasopoulou, Stavros Athanasopoulos, Kostas Karamanos and Yannis Almirantis
Physical Review E 82 (5) (2010)
https://doi.org/10.1103/PhysRevE.82.051917

On the motif distribution in random block-hierarchical networks

V.A. Avetisov, S.K. Nechaev and A.B. Shkarin
Physica A: Statistical Mechanics and its Applications 389 (24) 5895 (2010)
https://doi.org/10.1016/j.physa.2010.09.016

Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states

Daniel Reith and Peter Virnau
Computer Physics Communications 181 (4) 800 (2010)
https://doi.org/10.1016/j.cpc.2009.12.012

Development of Entanglements in a Fully Disentangled Polymer Melt

Thomas Vettorel and Kurt Kremer
Macromolecular Theory and Simulations 19 (1) 44 (2010)
https://doi.org/10.1002/mats.200900065

Contraction and Collapsing Kinetics of Single Synthetic Polymer Chains at Small Quench Depths

Jinming Hu, Di Wang, Jian Xu, Zhiyuan Zhu and Shiyong Liu
Macromolecular Chemistry and Physics 211 (24) 2573 (2010)
https://doi.org/10.1002/macp.201000476

Fractal dimension of chromatin is an independent prognostic factor for survival in melanoma

Valcinir Bedin, Randall L Adam, Bianca CS de Sá, Gilles Landman and Konradin Metze
BMC Cancer 10 (1) (2010)
https://doi.org/10.1186/1471-2407-10-260

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome

Thomas M Asbury, Matt Mitman, Jijun Tang and W Jim Zheng
BMC Bioinformatics 11 (1) (2010)
https://doi.org/10.1186/1471-2105-11-444

On scale-free and poly-scale behaviors of random hierarchical networks

V A Avetisov, A V Chertovich, S K Nechaev and O A Vasilyev
Journal of Statistical Mechanics: Theory and Experiment 2009 (07) P07008 (2009)
https://doi.org/10.1088/1742-5468/2009/07/P07008

Some physical applications of random hierarchical matrices

V. A. Avetisov, A. Kh. Bikulov, O. A. Vasilyev, S. K. Nechaev and A. V. Chertovich
Journal of Experimental and Theoretical Physics 109 (3) 485 (2009)
https://doi.org/10.1134/S1063776109090155

Refolding dynamics of stretched biopolymers upon force quench

Changbong Hyeon, Greg Morrison, David L. Pincus and D. Thirumalai
Proceedings of the National Academy of Sciences 106 (48) 20288 (2009)
https://doi.org/10.1073/pnas.0905764106

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander and Job Dekker
Science 326 (5950) 289 (2009)
https://doi.org/10.1126/science.1181369

Brownian dynamics simulation of polymer collapse in a poor solvent: influence of implicit hydrodynamic interactions

Tri Thanh Pham, Mohit Bajaj and J. Ravi Prakash
Soft Matter 4 (6) 1196 (2008)
https://doi.org/10.1039/b717350d

Comparison of the kinetics of chain aggregation and chain collapse in dilute polymer solutions

Yasuyuki Maki, Toshiaki Dobashi and Mitsuo Nakata
Physical Review E 78 (4) (2008)
https://doi.org/10.1103/PhysRevE.78.041802